This is the command fastaselect that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
fastaselect - select fasta sequences in a file
This script selects fasta sequences in a file according to names given in a name file.
Given a FASTA file (and possibly a FASTA quality file) and a file with names of reads,
select the sequences from the input FASTA (and quality file) and writes them to an output
If fasta quality file is present (same basename, but with .qual appended), then also
selects sequences from there.
Please check out the documentation below for more detailed information.
name filename containing all fasta sequences
-name name filename containing all names of sequences to select
filename where to write selcted sequences to
Use fastaselect online using onworks.net services