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fparse - Online in the Cloud

Run fparse in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fparse that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fpars - Discrete character parsimony

SYNOPSIS


fpars -infile discretestates -intreefile tree [-weights properties] -method list
[-maxtrees integer] -thorough toggle -rearrange boolean -njumble integer
-seed integer [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile
[-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean]
[-treeprint boolean] [-stepbox boolean] [-ancseq boolean] -dotdiff boolean

fpars -help

DESCRIPTION


fpars is a command line program from EMBOSS (“the European Molecular Biology Open Software
Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS


Input section
-infile discretestates
File containing one or more data sets

-intreefile tree

-weights properties

Additional section
-method list
Default value: Wagner

-maxtrees integer
Default value: 100

-thorough toggle
Default value: Y

-rearrange boolean
Default value: Y

-njumble integer

-seed integer
Default value: 1

-outgrno integer

-thresh toggle
Default value: N

-threshold float
Default value: 1

Output section
-outfile outfile

-trout toggle
Default value: Y

-outtreefile outfile

-printdata boolean
Default value: N

-progress boolean
Default value: Y

-treeprint boolean
Default value: Y

-stepbox boolean
Default value: N

-ancseq boolean
Default value: N

-dotdiff boolean
Default value: Y

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