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fpars - Discrete character parsimony


fpars -infile discretestates -intreefile tree [-weights properties] -method list
[-maxtrees integer] -thorough toggle -rearrange boolean -njumble integer
-seed integer [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile
[-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean]
[-treeprint boolean] [-stepbox boolean] [-ancseq boolean] -dotdiff boolean

fpars -help


fpars is a command line program from EMBOSS (“the European Molecular Biology Open Software
Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).


Input section
-infile discretestates
File containing one or more data sets

-intreefile tree

-weights properties

Additional section
-method list
Default value: Wagner

-maxtrees integer
Default value: 100

-thorough toggle
Default value: Y

-rearrange boolean
Default value: Y

-njumble integer

-seed integer
Default value: 1

-outgrno integer

-thresh toggle
Default value: N

-threshold float
Default value: 1

Output section
-outfile outfile

-trout toggle
Default value: Y

-outtreefile outfile

-printdata boolean
Default value: N

-progress boolean
Default value: Y

-treeprint boolean
Default value: Y

-stepbox boolean
Default value: N

-ancseq boolean
Default value: N

-dotdiff boolean
Default value: Y

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