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fpennye - Online in the Cloud

Run fpennye in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fpennye that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fpenny - Penny algorithm, branch-and-bound

SYNOPSIS


fpenny -infile discretestates [-weights properties] [-ancfile properties]
[-mixfile properties] -method list [-outgrno integer] [-howmany integer]
[-howoften integer] [-simple boolean] [-threshold float] -outfile outfile
[-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean]
[-treeprint boolean] [-stepbox boolean] [-ancseq boolean]

fpenny -help

DESCRIPTION


fpenny is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS


Input section
-infile discretestates
File containing one or more data sets

-weights properties

-ancfile properties

-mixfile properties

Additional section
-method list
Default value: Wagner

-outgrno integer

-howmany integer
Default value: 1000

-howoften integer
Default value: 100

-simple boolean

-threshold float
Default value: $(infile.discretesize)

Output section
-outfile outfile

-trout toggle
Default value: Y

-outtreefile outfile

-printdata boolean
Default value: N

-progress boolean
Default value: Y

-treeprint boolean
Default value: Y

-stepbox boolean
Default value: N

-ancseq boolean
Default value: N

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