This is the command gmod_sort_gff3.plp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
gmod_sort_gff3.pl - Sorts a GFF3 file to put lines with Parent tags after their parent.
% gmod_sort_gff3.pl --infile <gff file name>
--infile Name of the input gff3 file (required)
--outfile Name of the output gff3 file
This is a very simple (and only lightly tested) script for sorting gff3 files so that all
lines that have Parent tags come after the line that contains the parent ID tag. Files
thusly sorted are required for the GMOD chado bulk loader, gmod_bulk_load_gff3.pl.
Scott Cain <[email protected]>
Copyright (c) 2006
This library is free software; you can redistribute it and/or modify it under the same
terms as Perl itself.
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