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gmx-mk_angndx - Generate index files for 'gmx angle'


gmx mk_angndx [-s [<.tpr>]] [-n [<.ndx>]] [-type <enum>] [-[no]hyd]
[-hq <real>]


gmx mk_angndx makes an index file for calculation of angle distributions etc. It uses a
run input file (.tpx) for the definitions of the angles, dihedrals etc.


Options to specify input files:

-s [<.tpr>] (topol.tpr)
Portable xdr run input file

Options to specify output files:

-n [<.ndx>] (angle.ndx)
Index file

Other options:

-type <enum> (angle)
Type of angle: angle, dihedral, improper, ryckaert-bellemans

-[no]hyd (yes)
Include angles with atoms with mass < 1.5

-hq <real> (-1)
Ignore angles with atoms with mass < 1.5 and magnitude of their charge less than
this value

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