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godefe - Online in the Cloud

Run godefe in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command godefe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


godef - Find GO ontology terms by definition

SYNOPSIS


godef -query string [-namespace list] -subclasses boolean -obsolete boolean -godef outobo

godef -help

DESCRIPTION


godef is a command line program from EMBOSS (“the European Molecular Biology Open Software
Suite”). It is part of the "Ontology:GO,Data retrieval:Ontology data" command group(s).

OPTIONS


Input section
-query string

Additional section
-namespace list
By default all terms are returned. Searches can be limited to one or a few namespaces.
Default value: *

Advanced section
-subclasses boolean
Extend the query matches to include all terms which are specialisations (GO
sub-classes) of the matched type. Default value: N

-obsolete boolean
The default behaviour is to not use or return obsolete terms. This option if set will
include all terms. Default value: N

Output section
-godef outobo

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