This is the command grd2cptgmt that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
grd2cpt - Make linear or histogram-equalized color palette table from grid
grd2cpt grid [ [+]transparency ] [ cpt ] [ [i|o] ] [ nlevels ] [ [R|r|h|c ] [ zlo/zhi ] [
] [ minlimit/maxlimit ] [ ] [ ] [ [i|o] ] [ region ] [ zstart/zstop/zinc ] [ -|+|_|= ] [
[level] ] [ ] [ ]
Note: No space is allowed between the option flag and the associated arguments.
grd2cpt reads one or more grid files and writes a color palette (CPT) file to standard
output. The CPT file is based on an existing master CPT file of your choice, and the
mapping from data value to colors is through the data's cumulative distribution function
(CDF), so that the colors are histogram equalized. Thus if the grid(s) and the resulting
CPT file are used in grdimage with a linear projection, the colors will be uniformly
distributed in area on the plot. Let z be the data values in the grid. Define CDF(Z) = (#
of z < Z) / (# of z in grid). (NaNs are ignored). These z-values are then normalized to
the master CPT file and colors are sampled at the desired intervals.
The color palette includes three additional colors beyond the range of z-values. These are
the background color (B) assigned to values lower than the lowest z-value, the foreground
color (F) assigned to values higher than the highest z-value, and the NaN color (N)
painted wherever values are undefined. For color tables beyond the standard GMT
offerings, visit cpt-city: http://soliton.vm.bytemark.co.uk/pub/cpt-city/.
If the master CPT file includes B, F, and N entries, these will be copied into the new
master file. If not, the parameters COLOR_BACKGROUND, COLOR_FOREGROUND, and COLOR_NAN from
the gmt.conf file or the command line will be used. This default behavior can be overruled
using the options -D, -M or -N.
The color model (RGB, HSV or CMYK) of the palette created by makecpt will be the same as
specified in the header of the master CPT file. When there is no COLOR_MODEL entry in the
master CPT file, the COLOR_MODEL specified in the gmt.conf file or on the command line
will be used.
grid Names of one or more grid files used to derive the color palette table. All grids
need to have the same size and dimensions. (See GRID FILE FORMATS below).
Sets a constant level of transparency (0-100) for all color slices. Prepend + to
also affect the fore-, back-, and nan-colors [Default is no transparency, i.e., 0
-Ccpt Selects the master color table to use in the interpolation. Choose among the
built-in tables (type grd2cpt to see the list) or give the name of an existing CPT
file [Default gives a rainbow CPT file]. Yet another option is to specify
-Ccolor1,color2[,color3,...] to build a linear continuous CPT from those colors
automatically. In this case colorn can be a r/g/b triplet, a color name, or an
HTML hexadecimal color (e.g. #aabbcc ).
Select the back- and foreground colors to match the colors for lowest and highest
z-values in the output CPT file [Default uses the colors specified in the master
file, or those defined by the parameters COLOR_BACKGROUND, COLOR_FOREGROUND, and
COLOR_NAN]. Append i to match the colors for the lowest and highest values in the
input (instead of the output) CPT file.
Create a linear color table by dividing the grid z-range into nlevels equidistant
Force output CPT file to written with r/g/b codes, gray-scale values or color name
(R, default) or r/g/b codes only (r), or h-s-v codes (h), or c/m/y/k codes (c).
Truncate the incoming CPT so that the lowest and highest z-levels are to zlo and
zhi. If one of these equal NaN then we leave that end of the CPT alone. The
truncation takes place before any resampling.
-I Reverses the sense of color progression in the master CPT file. Also exchanges the
foreground and background colors, including those specified by the parameters
COLOR_BACKGROUND and COLOR_FOREGROUND.
Limit range of CPT file to minlimit/maxlimit, and don't count data outside this
range when estimating CDF(Z). [Default uses min and max of data.]
-M Overrule background, foreground, and NaN colors specified in the master CPT file
with the values of the parameters COLOR_BACKGROUND, COLOR_FOREGROUND, and COLOR_NAN
specified in the gmt.conf file or on the command line. When combined with -D, only
COLOR_NAN is considered.
-N Do not write out the background, foreground, and NaN-color fields [Default will
Selects a logarithmic interpolation scheme [Default is linear]. -Qi expects input
z-values to be log10(z), assigns colors, and writes out z [Default]. -Qo takes
log10(z) first, assigns colors, and writes out z.
-R[unit]xmin/xmax/ymin/ymax[r] (more ...)
Specify the region of interest.
-Szstart/zstop/zinc or -Sn
Set steps in CPT file. Calculate entries in CPT file from zstart to zstop in steps
of (zinc). Default chooses arbitrary values by a crazy scheme based on equidistant
values for a Gaussian CDF. Use -Sn to select n points from such a cumulative
normal distribution .
Force the color table to be symmetric about zero (from -R to +R). Append flag to
set the range R: - for R =|zmin|, + for R = |zmax|, _ for R = min(|zmin|, |zmax|),
or = for R = max(|zmin|, |zmax|).
-V Verbose operation. This will write CDF(Z) estimates to stderr. [Default is silent.]
-W Do not interpolate the input color table but pick the output colors starting at the
beginning of the map. This is particularly useful in combination with a categorical
color table. Cannot be used in combination with -Z.
-Z Will create a continuous color palette. [Default is discontinuous, i.e., constant
-^ or just -
Print a short message about the syntax of the command, then exits (NOTE: on Windows
use just -).
-+ or just +
Print an extensive usage (help) message, including the explanation of any
module-specific option (but not the GMT common options), then exits.
-? or no arguments
Print a complete usage (help) message, including the explanation of options, then
Print GMT version and exit.
Print full path to GMT share directory and exit.
GRID FILE FORMATS
By default GMT writes out grid as single precision floats in a COARDS-complaint netCDF
file format. However, GMT is able to produce grid files in many other commonly used grid
file formats and also facilitates so called "packing" of grids, writing out floating point
data as 1- or 2-byte integers. To specify the precision, scale and offset, the user should
add the suffix =id[/scale/offset[/nan]], where id is a two-letter identifier of the grid
type and precision, and scale and offset are optional scale factor and offset to be
applied to all grid values, and nan is the value used to indicate missing data. In case
the two characters id is not provided, as in =/scale than a id=nf is assumed. When
reading grids, the format is generally automatically recognized. If not, the same suffix
can be added to input grid file names. See grdconvert and Section grid-file-format of the
GMT Technical Reference and Cookbook for more information.
When reading a netCDF file that contains multiple grids, GMT will read, by default, the
first 2-dimensional grid that can find in that file. To coax GMT into reading another
multi-dimensional variable in the grid file, append ?varname to the file name, where
varname is the name of the variable. Note that you may need to escape the special meaning
of ? in your shell program by putting a backslash in front of it, or by placing the
filename and suffix between quotes or double quotes. The ?varname suffix can also be used
for output grids to specify a variable name different from the default: "z". See
grdconvert and Sections modifiers-for-CF and grid-file-format of the GMT Technical
Reference and Cookbook for more information, particularly on how to read splices of 3-,
4-, or 5-dimensional grids.
Sometimes you don't want to make a CPT file (yet) but would find it helpful to know that
90% of your data lie between z1 and z2, something you cannot learn from grdinfo. So you
can do this to see some points on the CDF(Z) curve (use -V option to see more):
gmt grd2cpt mydata.nc -V > /dev/null
To make a CPT file with entries from 0 to 200 in steps of 20, and ignore data below zero
in computing CDF(Z), and use the built-in master cpt file relief, run
gmt grd2cpt mydata.nc -Crelief -L0/10000 -S0/200/20 > mydata.cpt
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