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gt-seq - Online in the Cloud

Run gt-seq in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gt-seq that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-seq - Parse the given sequence file(s) and construct the corresponding index files.

SYNOPSIS


gt seq [option ...] sequence_file [...]

DESCRIPTION


-recreate [yes|no]
recreate index files, even if they exist already (default: no)

-showfasta [yes|no]
show all sequences (in FASTA format) (default: no)

-showseqnum [value]
show sequence with given number (in FASTA format) (default: undefined)

-gc-content [yes|no]
print GC-content (for DNA files) (default: no)

-stat [yes|no]
show sequence statistics (default: no)

-seqlengthdistri [yes|no]
show sequence length distribution (default: no)

-width [value]
set output width for FASTA sequence printing (0 disables formatting) (default: 0)

-o [filename]
redirect output to specified file (default: undefined)

-gzip [yes|no]
write gzip compressed output file (default: no)

-bzip2 [yes|no]
write bzip2 compressed output file (default: no)

-force [yes|no]
force writing to output file (default: no)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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