EnglishFrenchSpanish

Ad


OnWorks favicon

ilink - Online in the Cloud

Run ilink in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command ilink that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


ilink - GEMINI optimization procedure to find a locally optimal value of the theta vector
of recombination fractions

SYNOPSIS


ilink [options] ipedfile.dat pedfile.dat

DESCRIPTION


This manual page documents briefly the ilink command. In fact this is a very raw intend
to provide a manpage because the Debian GNU/Linux distribution requires each program to
have a manpage. Any enhancement would be greatly apreciated.

ilink is part of the fastlink software package.

ILINK uses the GEMINI optimization procedure to find a locally optimal value of the theta
vector of recombination fractions. If you use the default scripts produced by lcp, your
initial guess for theta is .1 in every dimension. GEMINI evaluates each theta by its
likelihood, seeking to find theta vectors that have a higher pedigree likelihood.

The GEMINI procedure has multiple iterations. Each iteration corresponds to one line of
output. Each iteration includes multiple likelihood function evaluations. Each iteration
has two phases. In Phase I GEMINI seeks to improve the current best theta. In Phase II,
GEMINI estimates the gradient of the likelihood with respect to the current best theta
vector. In the first iteration, Phase I only evaluates the likelihood at the initial
candidate theta.

When ILINK prints out a line such as: maxcensor can be reduced to -32767, it has completed
the first likelihood function evaluation. On long runs, this fact can be used to estimate
running time. A reasonable rough estimate for the number of function evaluations is
10*(number of dimensions of theta vector). The number of dimensions of the theta vector is
one fewer than the number of loci in most cases. If maletheta and femaletheta are allowed
to differ (sexdif is set to 1), then the number of dimensions doubles to 2 * (number of
loci - 1). Estimating other parameters (with fitmodel set to true) can also increase the
number of dimensions.

To learn more about ilink it might be useful to read the file
/usr/share/doc/fastlink/README.ILINK if you have a Debian GNU/Linux system.

OPTIONS


There might be options but I did not found any information about them. Please foreward
any information about them to <[email protected]>

Use ilink online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    AstrOrzPlayer
    AstrOrzPlayer
    AstrOrz Player is a free media player
    software, part based on WMP and VLC. The
    player is in a minimalist style, with
    more than ten theme colors, and can also
    b...
    Download AstrOrzPlayer
  • 2
    movistartv
    movistartv
    Kodi Movistar+ TV es un ADDON para XBMC/
    Kodi que permite disponer de un
    decodificador de los servicios IPTV de
    Movistar integrado en uno de los
    mediacenters ma...
    Download movistartv
  • 3
    Code::Blocks
    Code::Blocks
    Code::Blocks is a free, open-source,
    cross-platform C, C++ and Fortran IDE
    built to meet the most demanding needs
    of its users. It is designed to be very
    extens...
    Download Code::Blocks
  • 4
    Amidst
    Amidst
    Amidst or Advanced Minecraft Interface
    and Data/Structure Tracking is a tool to
    display an overview of a Minecraft
    world, without actually creating it. It
    can ...
    Download Amidst
  • 5
    MSYS2
    MSYS2
    MSYS2 is a collection of tools and
    libraries providing you with an
    easy-to-use environment for building,
    installing and running native Windows
    software. It con...
    Download MSYS2
  • 6
    libjpeg-turbo
    libjpeg-turbo
    libjpeg-turbo is a JPEG image codec
    that uses SIMD instructions (MMX, SSE2,
    NEON, AltiVec) to accelerate baseline
    JPEG compression and decompression on
    x86, x8...
    Download libjpeg-turbo
  • More »

Linux commands

  • 1
    abi-tracker
    abi-tracker
    abi-tracker - visualize ABI changes
    timeline of a C/C++ software library.
    DESCRIPTION: NAME: ABI Tracker
    (abi-tracker) Visualize ABI changes
    timeline of a C/C+...
    Run abi-tracker
  • 2
    abicheck
    abicheck
    abicheck - check application binaries
    for calls to private or evolving symbols
    in libraries and for static linking of
    some system libraries. ...
    Run abicheck
  • 3
    couriermlm
    couriermlm
    couriermlm - The Courier mailing list
    manager ...
    Run couriermlm
  • 4
    couriertcpd
    couriertcpd
    couriertcpd - the Courier mail server
    TCP server daemon ...
    Run couriertcpd
  • 5
    gbklatex
    gbklatex
    bg5latex - Use LaTeX directly on a Big5
    encodedtex file bg5pdflatex - Use
    pdfLaTeX directly on a Big5 encodedtex
    file bg5+latex - Use LaTeX directly on a
    Big5+...
    Run gbklatex
  • 6
    gbkpdflatex
    gbkpdflatex
    bg5latex - Use LaTeX directly on a Big5
    encodedtex file bg5pdflatex - Use
    pdfLaTeX directly on a Big5 encodedtex
    file bg5+latex - Use LaTeX directly on a
    Big5+...
    Run gbkpdflatex
  • More »

Ad