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info_on_seqs - Online in the Cloud

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This is the command info_on_seqs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


info_on_seqs - perform final step of SIFT prediction

SYNOPSIS


info_on_seqs <FASTA_FILE> <SUBSTITUTIONS_FILE> <OUTPUT>

DESCRIPTION


You should use SIFT_for_submitting_fasta_seq.csh instead of this program unless you know
what you are doing.

This program prepares the final SIFT prediction. In addition to the command line
arguments, it expects certain files present next to the FASTA_FILE.

OPTIONS


<FASTA_FILE>
Protein sequence in fasta format.

<SUBSTITUTIONS_FILE>
File of substitutions to be predicted. See /usr/share/doc/sift/examples/lacI.subst
for an example of the format. If you give '-', scores for all mutations of the entire
protein sequence are printed.

<OUTPUT>
Output file.

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