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insdseqget - Online in the Cloud

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This is the command insdseqget that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



insdseqget - format sequences from GenBank as an XML INSDSet


insdseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v]


insdseqget retrieves biological sequence data from GenBank (according to an input list of
GI accession numbers) and prints it out as an XML INSDSet document.


A summary of options is included below.

- Print usage message

-d filename
Input file name for date list (desired accessions, one per line, followed by a
blank line and a list of allowed dates, also one per line)

-i filename
Input file name for GI list (default = stdin)

-m n/p/b
Molecule type:
n Nucleotide (default)
p Protein
b Both

-n Return only new records (for which the given GI refers to an old version)

-o filename
Output file name for the XML INSDSet (default = stdout)

-v Fetch SNP Variations

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