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lamboot - Online in the Cloud

Run lamboot in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command lamboot that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


lamboot - Start a LAM multicomputer.

SYNOPSIS


lamboot [-b] [-d] [-h] [-H] [-l] [-s] [-v] [-V] [-x] [-nn] [-np] [-c conf file] [-prefix
/lam/install/path/] [-sessionprefix value] [-sessionsuffix value]
[-withlamprefixpath value] [-ssi key value] [bhost]

OPTIONS


-b Assume local and remote shell are the same. This means that only one remote shell
invocation is used to each node. If -b is not used, two remote shell invocations
are used to each node.

-d Turn on debugging output. This implies -v.

-h Print the command help menu.

-l Delay hostname-to-IP-address resolution.

-prefix Use the LAM installation specified in /lam/install/path/. Not compatible with
LAM/MPI versions prior to 7.1.

-s Close stdio on the local node.

-ssi key value
Send arguments to various SSI modules. See the "SSI" section, below.

-v Be verbose.

-x Run in fault tolerant mode.

-H Do not display the command header.

-nn Don't add "-n" to the remote agent command line

-np Do not force the execution of $HOME/.profile on remote hosts

-session-prefix value
Set the session prefix, overriding LAM_MPI_SESSION_PREFIX.

-session-suffix value
Set the session suffix, overriding LAM_MPI_SESSION_SUFFIX.

-withlamprefixpath value
Override the internal installation path. For internal use only, do not use unless
you know what you are doing.

ENVIRONMENT VARIABLES


LAM_MPI_SESSION_PREFIX

LAM_MPI_SESSION_SUFFIX
It is possible to change the session directory used by LAM/MPI, normally of the
form:

tmpdir/lam-username@hostname[-suffix]

tmpdir will be set to LAM_MPI_SESSION_PREFIX if set. Otherwise, it will fall back to
the value of TMPDIR. If neither of these are set, the default is /tmp.

suffix can be overridden by the LAM_MPI_SESSION_SUFFIX environment variable. If
LAM_MPI_SESSION_SUFFIX is not set and LAM is running under a supported batch
scheduling system, $suffix will be a value unique to the currently running job.

DESCRIPTION


The lamboot tool starts the LAM software on each of the machines specified in the boot
schema, bhost. The boot schema specifies the hostnames of nodes to be used in the run-
time MPI environment, and optionally lists how may CPUs LAM may used on each node. The
user may wish to first run the recon(1) tool to verify that LAM can be started.

Starting LAM is a three step procedure. In the first step, hboot(1) is invoked on each of
the specified machines. Then each machine allocates a dynamic port and communicates it
back to lamboot which collects them. In the third step, lamboot gives each machine the
list of machines/ports in order to form a fully connected topology. If any machine was
not able to start, or if a timeout period expires before the first step completes, lamboot
invokes lamwipe(1) to terminate LAM and reports the error.

The bhost file is a LAM boot schema written in the host file syntax. See bhost(5).
Instead of the command line, a boot schema can be specified in the LAMBHOST environment
variable. Otherwise a default file, lam-bhost.def, is used. LAM searches for bhost first
in the local directory and then in the installation directory under etc/.

In addition, lamboot uses a process schema for the individual LAM nodes. A process schema
(see conf(5)) is a description of the processes which constitute the operating system on a
node. In general, the system administrator maintains this file -- LAM/MPI users will
generally not need to change this file. It is also possible for the user to customize the
LAM software with a private process schema.

The bhost file
The format of the bhost file is documented in the bhost(5) man page.

lamboot will resolve all names in bhost on the node in which lamboot was invoked (the
origin node). After that, LAM will only use IP addresses, not names. Specifically, the
name resolution configuration on all other nodes is not used. Hence, the the origin node
must be able to resolve all the names in bhost to addresses that are reachable by all
other nodes.

A common mistake is to list localhost (or any name that resolves to the special address
127.0.0.1 -- the loopback TCP/IP device) in a bhost file that contains other nodes. In
this case, the address 127.0.0.1 would be sent to each of the other nodes as the address
of the origin node. If the other nodes try to use 127.0.0.1 to contact the origin node,
they will actually be contacting themselves, and would eventually timeout and fail.

The IP addresses obtained from bhost are used for LAM's meta messages: startup and
shutdown of jobs, out-of-band messages used for coordination, etc. The amount of traffic
is fairly low (unless using the "lamd" mode of MPI message passing, in which case all MPI
traffic will also utilize LAM's meta messages for transport -- see mpirun(1)). When using
the TCP RPI, these IP addresses are also used for MPI message passing via direct sockets
between each pair of nodes.

A common case is where a "master" node has multiple network interface cards (NICs) -- one
that is connected to a public network, and one that is connected to a private network
where parallel jobs are to be run. To include the master node in a bhost file, the IP
name (or address) of the NIC on the private network should be listed in bhost. This
ensures that all the other nodes can reach the master node on the private network.

As another example, some configurations have multiple TCP/IP NICs in each node of a
parallel job. One NIC is considered "slow" (e.g., 10Mbps), while the other is considered
"fast" (e.g., 100Mbps). It is desirable to allow LAM to take advantage of the higher
bandwidth on the "fast" network for MPI messages. As such, bhost should list the IP names
(or addresses) of all the "fast" NICs. However, if the LAM RPI does not use TCP/IP (e.g.,
the Myrinet/GM RPI), the bhost file should probably list the "slow" NICs so that LAM's
meta message traffic does not cause overhead and potentially detract from performance on
the "fast" network from other high-performance applications.

Delaying hostname lookups
Normally, name resolution of hostnames is done on the machines where lamboot is invoked.
This is done for optimization reasons, so that the list of hostnames only needs to be
resolved once (potentially minimizing the amount of DNS or other hostname-lookup network
traffic).

However, in some non-uniform networking environments, this is not sufficient because each
host may have a different IP address on each of its peers. For example, host A may have
address Z on host B, but have address Y on host C.

The -l option to lamboot will cause LAM to distribute hostnames to each node rather than a
fully resolved set of IP addresses. Hence, each node where LAM is booted will do its own
name resolution on the list of hostnames.

SSI (System Services Interface)
The -ssi switch allows the passing of parameters to various SSI modules. LAM's SSI
modules are described in detail in lamssi(7). SSI modules have direct impact on MPI
programs because they allow tunable parameters to be set at run time (such as which boot
device driver to use, what parameters to pass to that driver, etc.).

The -ssi switch takes two arguments: key and value. The key argument generally specifies
which SSI module will receive the value. For example, the key "boot" is used to select
which RPI to be used for starting processes on remote nodes. The value argument is the
value that is passed. For example:

lamboot -ssi boot tm
Tells LAM to use the "tm" boot module for native launching in PBSPro / OpenPBS
environments (the tm boot module does not require a boot schema).

lamboot -ssi boot rsh -ssi rsh_agent "ssh -x" boot_schema
Tells LAM to use the "rsh" boot module, and tells the rsh module to use "ssh -x" as
the specific agent to launch executables on remote nodes.

And so on. LAM's boot SSI modules are described in lamssi_boot(7). This page should be
consulted for specific actions that are taken by, and how to tweak the run-time behavior
of each boot module.

The -ssi switch can be used multiple times to specify different key and/or value
arguments. If the same key is specified more than once, the values are concatenated with
a comma (",") separating them.

Note that the -ssi switch is simply a shortcut for setting environment variables. The
same effect may be accomplished by setting corresponding environment variables before
running lamboot. The form of the environment variables that LAM sets are:
LAM_MPI_SSI_key=value.

Note that the -ssi switch overrides any previously set environment variables. Also note
that unknown key arguments are still set as environment variable -- they are not checked
(by lamwipe) for correctness. Illegal or incorrect value arguments may or may not be
reported -- it depends on the specific SSI module.

Remote Executable Invocation
All tweakable aspects of launching executables on remote nodes during lamboot are
discussed in lamssi(7) and lamssi_boot(7). Topics include (but are not limited to):
discovery of remote shell, run-time overrides of the agent use to launch remote
executables (e.g., rsh and ssh), etc.

Closing stdio
The stdio of each LAM daemon on a remote host that is launched by lamboot is closed by
default. Normally, the stdio of the LAM daemon launched on the local host is left open so
that the internal LAM tstdio(3) package works properly. However, it is sometimes
desirable to close the stdio of the local LAM daemon as well. For example:

rsh somenode lamboot -s hostfile

This is because rsh waits for two conditions before exiting: lamboot to exit, and stdout /
stderr to be closed. Without -s, stdout / stderr would not be closed, and rsh (and ssh)
will hang even though lamboot had completed. -s causes the stdout / stderr of the local
LAM daemon to be closed upon invocation, which will allow rsh to complete. Using -s will
not affect lamboot in any other way, but it will prevent the tstdio(3) package from
working properly.

Fault Tolerance
If the -x option is given, LAM runs in fault tolerant mode. In this mode, nodes exchange
``heart beat'' messages periodically to make sure all nodes are running and the links
connecting them are operational. When a node's heart beats stop, it is declared ``dead''
and all LAM nodes (and processes) are notified. This allows users to write fault tolerant
applications that can degrade gracefully, or fully recover by replacing the defunct node
with another (see lamgrow(1)). Since this mode introduces a performance penalty, it is
not activated by default.

EXAMPLES


lamboot -v
Start LAM on the machines described in the default boot schema. Report about
important steps as they are done.

lamboot -d hostfile
Start LAM on the machines described in file hostfile. Provide incredibly detailed
reports on what is happening at each stage in the boot process.

lamboot mynodes
Start LAM on the machines described in the boot schema mynodes. Operate silently.

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