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This is the command last-dotplot that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



last-dotplot - make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format


last-dotplot --help
last-dotplot [options] maf-or-tab-alignments dotplot.png
last-dotplot [options] maf-or-tab-alignments dotplot.gif


Draw a dotplot of pair-wise sequence alignments in MAF or tabular format.


-h, --help
show this help message and exit

which sequences to show from the 1st genome

which sequences to show from the 2nd genome

-x WIDTH, --width=WIDTH
maximum width in pixels (default: 1000)

-y HEIGHT, --height=HEIGHT
maximum height in pixels (default: 1000)

-f FILE, --fontfile=FILE
TrueType or OpenType font file

-s SIZE, --fontsize=SIZE
TrueType or OpenType font size (default: 11)

-c COLOR, --forwardcolor=COLOR
color for forward alignments (default: red)

-r COLOR, --reversecolor=COLOR
color for reverse alignments (default: blue)

Unsequenced gap options:

read genome1 unsequenced gaps from agp or gap file

read genome2 unsequenced gaps from agp or gap file

color for bridged gaps (default: yellow)

color for unbridged gaps (default: pink)

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