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libscanoute - Online in the Cloud

Run libscanoute in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command libscanoute that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


libscanout - Reads a DHF file and writes a file of top-scoring Classes, Folds and
Superfamilies.

SYNOPSIS


libscanout -dhfinfile infile -outfile outfile

libscanout -help

DESCRIPTION


libscanout is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Protein:3D Structure" command group(s).

OPTIONS


Input section
-dhfinfile infile
This option specifies the location of the DHF file (domain hits file) (input). A
'domain hits file' contains database hits (sequences) with domain classification
information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family
and are found from a search of a sequence database. Files containing hits retrieved by
PSIBLAST are generated by using SEQSEARCH.

Required section
Output section
-outfile outfile
This option specifies the location of the summary file (output). The summary file
contains lists of domain Classes, Superfamilies and Families rank-ordered on the basis
of score (highest-scoring first).

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