This is the command makemat that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
makemat - convert binary profiles into portable ASCII form
SYNOPSIS
makemat [-] [-E N] [-G N] [-H] [-P filename] [-S X] [-U str] [-d str] [-z N]
DESCRIPTION
makemat converts a collection of binary profiles, created by the -C option of PSI-BLAST,
into portable ASCII form.
OPTIONS
A summary of options is included below.
- Print usage message
-E N Cost to extend a gap (default = 1)
-G N Cost to open a gap (default = 11)
-H Print help; overrides all other arguments
-P filename
Database name for profile database (default = stdin)
-S X Scaling factor for matrix outputs to avoid round-off problems (default = 100)
-U str Underlying Matrix (default = BLOSUM62)
-d str Underlying sequence database used to make profiles (default = nr)
-z N Effective length of the profile database (0 for length of -d option)
Use makemat online using onworks.net services
