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makemat - Online in the Cloud

Run makemat in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command makemat that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


makemat - convert binary profiles into portable ASCII form

SYNOPSIS


makemat [-] [-E N] [-G N] [-H] [-P filename] [-S X] [-U str] [-d str] [-z N]

DESCRIPTION


makemat converts a collection of binary profiles, created by the -C option of PSI-BLAST,
into portable ASCII form.

OPTIONS


A summary of options is included below.

- Print usage message

-E N Cost to extend a gap (default = 1)

-G N Cost to open a gap (default = 11)

-H Print help; overrides all other arguments

-P filename
Database name for profile database (default = stdin)

-S X Scaling factor for matrix outputs to avoid round-off problems (default = 100)

-U str Underlying Matrix (default = BLOSUM62)

-d str Underlying sequence database used to make profiles (default = nr)

-z N Effective length of the profile database (0 for length of -d option)

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