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maq.pl - Online in the Cloud

Run maq.pl in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command maq.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


maq.pl - helper script for maq

SYNOPSIS


maq.pl <command> [options] <input> [...]

DESCRIPTION


helper script for maq

Version: 0.4.7

OPTIONS.


easyrun
simple pipeline for small dataset

demo demonstration of maq functionalities (for SE only)

SNPfilter
filter SNPs

statmap
extract statistics from the error output of 'maq map'

chrpt2snp
convert dbSNP's chr_rpt file to .snp file

ucsc2snp
convert UCSC's SNP dump to .snp file

fastq2bfq
convert fastq in batch

cat2pair
convert paired end reads format

sv call structural variations

indelpe
post-processing indelpe output

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