This is the command maq.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
maq.pl - helper script for maq
SYNOPSIS
maq.pl <command> [options] <input> [...]
DESCRIPTION
helper script for maq
Version: 0.4.7
OPTIONS.
easyrun
simple pipeline for small dataset
demo demonstration of maq functionalities (for SE only)
SNPfilter
filter SNPs
statmap
extract statistics from the error output of 'maq map'
chrpt2snp
convert dbSNP's chr_rpt file to .snp file
ucsc2snp
convert UCSC's SNP dump to .snp file
fastq2bfq
convert fastq in batch
cat2pair
convert paired end reads format
sv call structural variations
indelpe
post-processing indelpe output
Use maq.pl online using onworks.net services
