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masai_indexer - Online in the Cloud

Run masai_indexer in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command masai_indexer that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


masai_indexer - Masai Indexer

SYNOPSIS

masai_indexer [OPTIONS] <GENOME FILE>

DESCRIPTION

Masai is a fast and accurate read mapper based on approximate seeds and multiple
backtracking.

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

-h, --help

Displays this help message.

--version

Display version information

Genome Index Options:

-x, --index STR

Select the genome index type. One of esa, sa, qgram, and fm. Default: sa.

-xp, --index-prefix STR

Specify an genome index prefix name. Default: use the genome filename prefix.

Output Options:

-t, --tmp-folder STR

Specify a huge temporary folder. Default: use the genome folder.

VERSION

masai_indexer version: 0.7.1 [14053] Last update 2013-05-16

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