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masai_indexer - Masai Indexer


masai_indexer [OPTIONS] <GENOME FILE>


Masai is a fast and accurate read mapper based on approximate seeds and multiple

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

-h, --help

Displays this help message.


Display version information

Genome Index Options:

-x, --index STR

Select the genome index type. One of esa, sa, qgram, and fm. Default: sa.

-xp, --index-prefix STR

Specify an genome index prefix name. Default: use the genome filename prefix.

Output Options:

-t, --tmp-folder STR

Specify a huge temporary folder. Default: use the genome folder.


masai_indexer version: 0.7.1 [14053] Last update 2013-05-16

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