EnglishFrenchSpanish

OnWorks favicon

maskAlignedReads - Online in the Cloud

Run maskAlignedReads in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command maskAlignedReads that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


maskAlignedReads.py - Mask aligned reads in regions file

DESCRIPTION


usage: maskAlignedReads.py [-h] [-v] [-l LOGFILE] [-d] [-i]

inCmpFile inRgnFofn outRgnFofn

Use in.cmp.h5 to mask corresponing regions of files in in.rgn.h5, write output to a new
rgn.fofn.

positional arguments:
inCmpFile
An input cmp.h5 file.

inRgnFofn
A fofn of input region table files.

outRgnFofn
A fofn of output region table files.

optional arguments:
-h, --help
show this help message and exit

-v, --version
show program's version number and exit

-l LOGFILE, --logFile LOGFILE
Specify a file to log to. Defaults to stderr. (default: None)

-d, --debug
Increases verbosity of logging (default: False)

-i, --info
Display informative log entries (default: False)

Use maskAlignedReads online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

Linux commands

  • 1
    a2x
    a2x
    a2x - A toolchain manager for AsciiDoc
    (converts Asciidoc text files to other
    file formats) ...
    Run a2x
  • 2
    a5booklet
    a5booklet
    a5booklet - copy two A5 pages from advi
    file to one A4 page in another. ...
    Run a5booklet
  • 3
    cppman
    cppman
    cppman - C++ manual page viewer /
    fetcher ...
    Run cppman
  • 4
    cppo
    cppo
    cppo - lightweight cpp-like
    preprocessor for OCaml ...
    Run cppo
  • 5
    g.guigrass
    g.guigrass
    g.gui - Launches a GRASS graphical user
    interface (GUI) session. Optionally
    updates default user interface settings.
    KEYWORDS: general, GUI, user interface ...
    Run g.guigrass
  • 6
    g.gui.animationgrass
    g.gui.animationgrass
    g.gui.animation - Tool for animating a
    series of raster and vector maps or a
    space time raster or vector dataset.
    KEYWORDS: general, GUI, display,
    animation ...
    Run g.gui.animationgrass
  • More »

Ad