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megamergere - Online in the Cloud

Run megamergere in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command megamergere that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


megamerger - Merge two large overlapping DNA sequences

SYNOPSIS


megamerger -asequence sequence -bsequence sequence -wordsize integer [-prefer boolean]
-outseq seqout -outfile outfile

megamerger -help

DESCRIPTION


megamerger is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Consensus" command group(s).

OPTIONS


Input section
-asequence sequence

-bsequence sequence

Required section
-wordsize integer
Default value: 20

Additional section
-prefer boolean
When a mismatch between the two sequence is discovered, one or other of the two
sequences must be used to create the merged sequence over this mismatch region. The
default action is to create the merged sequence using the sequence where the mismatch
is closest to that sequence's centre. If this option is used, then the first sequence
(seqa) will always be used in preference to the other sequence when there is a
mismatch. Default value: N

Output section
-outseq seqout

-outfile outfile

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