EnglishFrenchSpanish

OnWorks favicon

mia-3ddistance-stats - Online in the Cloud

Run mia-3ddistance-stats in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command mia-3ddistance-stats that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


mia-3ddistance-stats - Evaluate distance statistics for two labeled images.

SYNOPSIS


mia-3ddistance-stats -i <in-labels> -r <ref-labels> -o <out-file> [options]

DESCRIPTION


mia-3ddistance-stats This program is used to evaluate the distance between equally
labelled areas in two images. The output file is a csv file containing the distances for
each labeled coordinate in the test image in the following form:

label,n-samples,distance,distance,...

A simple R program to get some per label statistics from this data would look like

args <- commandArgs(TRUE)
data <- read.csv(args[1], header=FALSE)
for ( i in 1:dim(data)[1] ) {
line <- data[i,]
label <- as.integer(line[1])
end_range <- 2 + as.numeric(line[2])
s <- as.numeric(line[3:end_range])
result <- sprintf("%d %8.4f %8.4f %8.4f %8.4f0
label, mean(s), sqrt(var(s)), median(s), max(s))
cat(result)
}

OPTIONS


File-IO
-i --in-labels=(input, required); io
input label image For supported file types see PLUGINS:3dimage/io

-r --ref-labels=(input, required); io
reference label image For supported file types see PLUGINS:3dimage/io

-l --label-map=(input); string
optional mapping of label numbers

-o --out-file=(output, required); string
output file name to write the distances to. The output file is a csv file,
containing distances listed for each label.

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

PLUGINS: 3dimage/io


analyze Analyze 7.5 image

Recognized file extensions: .HDR, .hdr

Supported element types:
unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit,
floating point 64 bit

datapool Virtual IO to and from the internal data pool

Recognized file extensions: .@

dicom Dicom image series as 3D

Recognized file extensions: .DCM, .dcm

Supported element types:
signed 16 bit, unsigned 16 bit

hdf5 HDF5 3D image IO

Recognized file extensions: .H5, .h5

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating
point 32 bit, floating point 64 bit

inria INRIA image

Recognized file extensions: .INR, .inr

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32
bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

mhd MetaIO 3D image IO using the VTK implementation (experimental).

Recognized file extensions: .MHA, .MHD, .mha, .mhd

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32
bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

nifti NIFTI-1 3D image IO

Recognized file extensions: .NII, .nii

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32
bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32
bit, floating point 64 bit

vff VFF Sun raster format

Recognized file extensions: .VFF, .vff

Supported element types:
unsigned 8 bit, signed 16 bit

vista Vista 3D

Recognized file extensions: .V, .VISTA, .v, .vista

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64
bit

vti 3D image VTK-XML in- and output (experimental).

Recognized file extensions: .VTI, .vti

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32
bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

vtk 3D VTK image legacy in- and output (experimental).

Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64
bit

EXAMPLE


Evaluate the distances for each label availabe in image.v to the corresponding labels in
the image reference.v ans store the result a coma separated list of values, i.e.
distances.csv.

mia-3ddistance-stats -i image.v -r reference.v -o distances.csv

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

Use mia-3ddistance-stats online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    movistartv
    movistartv
    Kodi Movistar+ TV es un ADDON para XBMC/
    Kodi que permite disponer de un
    decodificador de los servicios IPTV de
    Movistar integrado en uno de los
    mediacenters ma...
    Download movistartv
  • 2
    Code::Blocks
    Code::Blocks
    Code::Blocks is a free, open-source,
    cross-platform C, C++ and Fortran IDE
    built to meet the most demanding needs
    of its users. It is designed to be very
    extens...
    Download Code::Blocks
  • 3
    Amidst
    Amidst
    Amidst or Advanced Minecraft Interface
    and Data/Structure Tracking is a tool to
    display an overview of a Minecraft
    world, without actually creating it. It
    can ...
    Download Amidst
  • 4
    MSYS2
    MSYS2
    MSYS2 is a collection of tools and
    libraries providing you with an
    easy-to-use environment for building,
    installing and running native Windows
    software. It con...
    Download MSYS2
  • 5
    libjpeg-turbo
    libjpeg-turbo
    libjpeg-turbo is a JPEG image codec
    that uses SIMD instructions (MMX, SSE2,
    NEON, AltiVec) to accelerate baseline
    JPEG compression and decompression on
    x86, x8...
    Download libjpeg-turbo
  • 6
    Xtreme Download Manager
    Xtreme Download Manager
    The project has a new home now:
    https://xtremedownloadmanager.com/ For
    developers:
    https://github.com/subhra74/xdm Xtreme
    Download Manager is a powerful tool t...
    Download Xtreme Download Manager
  • More »

Linux commands

  • 1
    acl_grant
    acl_grant
    rsbac-admin - Rule Set Based Access
    Control DESCRIPTION: rsbac-admin is a
    set of tool used to manage systems using
    a Rule Set Based Access Control (RSBAC)
    kern...
    Run acl_grant
  • 2
    acl_group
    acl_group
    rsbac-admin - Rule Set Based Access
    Control DESCRIPTION: rsbac-admin is a
    set of tool used to manage systems using
    a Rule Set Based Access Control (RSBAC)
    kern...
    Run acl_group
  • 3
    coolmail
    coolmail
    coolmail - 3D animated mail notificaion
    utility ...
    Run coolmail
  • 4
    coop-computing-tools
    coop-computing-tools
    coop-computing-tools - share resources
    in a heterogeneous, and unreliable
    computing environment DESCRIPTION: The
    Cooperative Computing Tools (cctools)
    are a co...
    Run coop-computing-tools
  • 5
    g3dviewer
    g3dviewer
    g3dviewer - a program to display and
    inspect 3D models ...
    Run g3dviewer
  • 6
    g3tolj
    g3tolj
    g3tolj - converts a Group 3 fax file
    into a printable HP-PCL file ...
    Run g3tolj
  • More »

Ad