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mia-3ddistance - Online in the Cloud

Run mia-3ddistance in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command mia-3ddistance that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


mia-3ddistance - Evaluate the distance between two binary shapes.

SYNOPSIS


mia-3ddistance -i <in-file> -r <ref-file> -o <out-file> [options]

DESCRIPTION


mia-3ddistance This program takes two binary masks as input and evaluates the distance of
one mask with respect to the other in voxel space. The output is given as text file with
the coordinates of the source voxels and their distance to the reference mask. Correction
for voxel size must be done after processing.

OPTIONS


File IO
-i --in-file=(input, required); string
input image(s) that contain the source pixel mask

-r --ref-file=(input, required); string
reference mask to evaluate the distance from

-o --out-file=(output, required); string
output file name

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

Test
--self-test
run a self test

EXAMPLE


Evaluate the distance of the mask given in the images srcXXXX.png to the mask given in
refXXXX.png and save the result to distances.txt

mia-3ddistance -i srcXXXX.png -r refXXXX.png -o distances.txt

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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