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PROGRAM:

NAME


mia-meshdistance-to-stackmask - Evaluate the distance between a binary shape given as
reference and a mesh.

SYNOPSIS


mia-meshdistance-to-stackmask -i <in-mesh> -r <ref-mask> -o <out-mesh> [options]

DESCRIPTION


mia-meshdistance-to-stackmask This program takes a binary masks and a triangular mesh as
input and evaluates the distance of the mesh vertices to the binary maskand stores the
result in a new mesh.

OPTIONS


-i --in-mesh=(input, required); io
input mesh For supported file types see PLUGINS:mesh/io

-r --ref-mask=(input, required); io
reference binary mask For supported file types see PLUGINS:2dimage/io

-o --out-mesh=(output, required); io
output mesh For supported file types see PLUGINS:mesh/io

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

PLUGINS: 2dimage/io


bmp BMP 2D-image input/output support

Recognized file extensions: .BMP, .bmp

Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit

datapool Virtual IO to and from the internal data pool

Recognized file extensions: .@

dicom 2D image io for DICOM

Recognized file extensions: .DCM, .dcm

Supported element types:
signed 16 bit, unsigned 16 bit

exr a 2dimage io plugin for OpenEXR images

Recognized file extensions: .EXR, .exr

Supported element types:
unsigned 32 bit, floating point 32 bit

jpg a 2dimage io plugin for jpeg gray scale images

Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg

Supported element types:
unsigned 8 bit

png a 2dimage io plugin for png images

Recognized file extensions: .PNG, .png

Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit

raw RAW 2D-image output support

Recognized file extensions: .RAW, .raw

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64
bit

tif TIFF 2D-image input/output support

Recognized file extensions: .TIF, .TIFF, .tif, .tiff

Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

vista a 2dimage io plugin for vista images

Recognized file extensions: .V, .VISTA, .v, .vista

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64
bit

PLUGINS: mesh/io


datapool Virtual IO to and from the internal data pool

Recognized file extensions: .@

off plugin to load/store some Geomview OFF Files

Recognized file extensions: .OFF, .off

ply Ply triangle mesh input/output support

Recognized file extensions: .PLY, .ply

stl STL mesh io plugin

Recognized file extensions: .STL, .stl

vista Vista/Simbio triangle mesh input/output support

Recognized file extensions: .V, .VMESH, .v, .vmesh

vtk A subset of VTK mesh in-and output: Triangle meshes are written, and triangle
meshes and triangle strips are read. Additional per-vertex attributes are
supported: 'normals', 'colors' for three component colors, and 'scale' for a
scalar value attached to each vertex. The data is written by the
vtkPolyDataWriter in binary format.

Recognized file extensions: .VTK, .VTKMESH, .vtk, .vtkmesh

EXAMPLE


Evaluate the distance of the mask given in the images maskXXXX.png to the mesh given in
mesh.v and save the result to mesh-dist.v

mia-meshdistance-to-stackmask -i mesh.v -r maskXXXX.png -o mesh-dist.v

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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