njplot - Online in the Cloud

PROGRAM:

NAME

njplot - A phylogenetic tree drawing program for biologists newicktops - draw phylogenetic
trees into PostScript file

SYNOPSIS

njplot [options] tree_file

newicktops [options] tree_file

newicktotxt [options] tree_file

DESCRIPTION

This manual page documents briefly the njplot command.

The newicktops command does exactly the same but needs no X11 display. The output is
rendered into a PostScript file.

The newicktotxt command does exactly the same as newicktops but the output is rendered
into a text file.

This manual page was rewritten for the Debian GNU/Linux distribution because the original
program does not have a manual page.

njplot is a tree drawing program able to draw any binary or multi-branched tree expressed
in the standard phylogenetic tree format (e.g., the format used by the PHYLIP package).
NJplot is especially convenient for rooting the unrooted trees obtained from parsimony,
distance or maximum likelihood tree-building methods.

Any rooting of the unrooted tree can be interactively specified using the mouse. NJplot
also allows zooming, branch swapping, display of bootstrap scores and saving in the
PostScript format. NJplot can therefore be used as a graphical extension of any package
of phylogenetic program which employs the standard tree format for storing trees (i.e.,
with most such packages).

OPTIONS

There are only the following options which only work in an x-terminal-emulator, but not in
console mode:

-h Prints out brief help.

-us Postscript tree file prepared for US Letter paper size.

-psonly
No window interface, just write the PostScript tree file.

-size n
Font size n used for taxon names.

-pc n number of pages for PostScript output.

-psize widthxheight
size of PostScript page expressed as WIDTHxHEIGHT.

-lengths
Show branch lengths if they appear in tree file.

-boot Show bootstrap values if they appear in tree file.

-notitle
Don't include title in PostScript output.

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