This is the command patmatmotifse that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
patmatmotifs - Scan a protein sequence with motifs from the PROSITE database
SYNOPSIS
patmatmotifs -sequence sequence [-full boolean] [-prune boolean] -outfile report
patmatmotifs -help
DESCRIPTION
patmatmotifs is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Protein:Motifs" command group(s).
OPTIONS
Input section
-sequence sequence
Additional section
-full boolean
Default value: N
-prune boolean
Ignore simple patterns. If this is true then these simple post-translational
modification sites are not reported: myristyl, asn_glycosylation, camp_phospho_site,
pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site. Default value: Y
Output section
-outfile report
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