This is the command removeDup that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
removeDup - a component of subread suite
USAGE
removeDup [options] -i <input_file> -o <output_file>
Required arguments:
-i <string> Name of input file in SAM format.
-o <string> Name of output SAM file including filtered reads.
Aptional arguments:
-r <int>
Specify the duplication cutoff. All the reads mapped to a location are removed from
the output if the number of reads mapped to this location is equal or higher than
the cutoff. 10 by default.
-t <string> A directory storing temporary files generated by the program.
-c <int>
The maximum number of reads the input file can have. 40 million by default.
Use removeDup online using onworks.net services
