This is the command showdbe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
showdb - Displays information on configured databases
SYNOPSIS
showdb [-database string] [-html boolean] [-protein boolean] [-nucleic boolean]
[-sequence boolean] [-feature boolean] [-text boolean] [-taxonomy boolean]
[-resource boolean] [-assembly boolean] [-obo boolean] [-full boolean]
[-methods boolean] [-fields boolean] [-defined boolean] [-release boolean]
-only toggle -heading boolean -type boolean -id boolean -query boolean -all boolean
-comment boolean [-outfile outfile]
showdb -help
DESCRIPTION
showdb is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Data resources" command group(s).
OPTIONS
Input section
-database string
Additional section
-html boolean
Default value: N
-protein boolean
Default value: Y
-nucleic boolean
Default value: Y
-sequence boolean
Default value: Y
-feature boolean
Default value: Y
-text boolean
Default value: Y
-taxonomy boolean
Default value: Y
-resource boolean
Default value: Y
-assembly boolean
Default value: Y
-obo boolean
Default value: Y
-full boolean
Default value: N
-methods boolean
This displays the access methods that can be used on this database, for all, query or
ID access Default value: $(full)
-fields boolean
This displays the search fields that can be used on this database, other than the
standard 'id' or 'acc' fields. Default value: $(full)
-defined boolean
This displays a short name for the file containing the database definition Default
value: $(full)
-release boolean
Default value: $(full)
Advanced section
-only toggle
This is a way of shortening the command line if you only want a few standard columns
to be displayed. Instead of specifying: '-nohead -notype -noid -noquery -noall' to get
only the comment output, you can specify '-only -comment' Default value: N
-heading boolean
Default value: @(!$(only))
-type boolean
Default value: @(!$(only))
-id boolean
Default value: @(!$(only))
-query boolean
Default value: @(!$(only))
-all boolean
Default value: @(!$(only))
-comment boolean
Default value: @(!$(only))
Output section
-outfile outfile
Default value: stdout
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