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teem-gprobe - Online in the Cloud

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This is the command teem-gprobe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


Teem-gprobe - Shows off the functionality of the gage library

SYNOPSIS


teem-gprobe -i <nin> -k <kind> [-v <verbosity>] -q <query> \fR

DESCRIPTION


./teem-gprobe: Shows off the functionality of the gage library. Uses gageProbe() to query
various kinds of volumes to learn various measured or derived quantities.

[-gmc <min gradmag>] [-ofs] [-seed <N>] [-k00 <kern00>] [-k11 <kern11>] \ [-k22
<kern22>] [-rn] [-ssn <SS #>] [-ssr <scale range>] \ [-kssb <kernel>] [-kssr
<kernel>] [-ssu] [-sso] [-ssnd] [-ssf <SS \ read/save format>] [-s <sclX sclY
sxlZ>] [-ssp <pos>] [-pg <nrrd>] \ [-pi <nrrd>] [-pp <pos ...>] [-eps <epsilon>]
[-psi <p>] [-t <type>] \ [-o <nout>]

-i <nin> = input volume

-k <kind> = "kind" of volume ("scalar", "vector", "tensor",

or "dwi")

-v <verbosity> = verbosity level (int); default: "1"

-q <query> = the quantity (scalar, vector, or matrix) to learn

by probing (string)

-gmc <min gradmag> = For curvature-based queries, use zero when
gradient magnitude is below this (double); default: "0.0"

-ofs = If only per-axis spacing is available, use that

to contrive full orientation info

-seed <N> = RNG seed; mostly for debugging (unsigned int);

default: "42"

-k00 <kern00> = kernel for gageKernel00; default: "tent" -k11 <kern11> = kernel for
gageKernel11; default: "cubicd:1,0" -k22 <kern22> = kernel for gageKernel22;
default: "cubicdd:1,0"

-rn = renormalize kernel weights at each new sample

location. "Accurate" kernels don't need this; doing it always makes things go
slower

-ssn <SS #> = how many scale-space samples to evaluate, or, 0

to turn-off all scale-space behavior (unsigned int); default: "0"

-ssr <scale range> = range of scales in scale-space (2 doubles);
default: "nan nan"

-kssb <kernel> = blurring kernel, to sample scale space;

default: "dgauss:1,5"

-kssr <kernel> = kernel for reconstructing from scale space

samples; default: "hermite"

-ssu = do uniform samples along sigma, and not (by

default) samples according to the effective diffusion scale

-sso = if not using "-ssu", use pre-computed optimal

sigmas when possible

-ssnd = normalize derivatives by scale

-ssf <SS read/save format> = printf-style format (including a "%u") for the

filenames from which to read pre-blurred volumes computed for the stack, if they
exist and match the stack parameters, and where to save them if they had to be
re-computed. Leave this as empty string to disable this. (string); default: ""

-s <sclX sclY sxlZ> = scaling factor for resampling on each axis (>1.0
: supersampling); use "-ssp" (and "-psi")to specify scale position of sampling (3
doubles); default: "1 1 1"

-ssp <pos> = when using scale-space, scale-position at which

to probe (double); default: "0"

-pg <nrrd> = overrides "-s": 2-D nrrd which specifies origin

and direction vectors for sampling grid; default: ""

-pi <nrrd> = overrides "-pv": probes at this list of 3-vec or

4-vec positions; default: ""

-pp <pos ...> = overrides "-pi": only sample at this specified

point (3..4 doubles); default: "nan nan nan"

-eps <epsilon> = if non-zero, and if query is a scalar, and if

using "pp" to query at a single point, then do epsilon offset probes to calculate
discrete differences, to find the numerical gradient and hessian (for debugging)
(double); default: "0"

-psi <p> = whether the probe location specification (by any

of the four previous flags) are in index space (bool); default: "true"

-t <type> = type of output volume (type); default: "float" -o <nout> = output
volume (string); default: "-"

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