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Free download bspipe to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named bspipe to run in Linux online whose latest release can be downloaded as bspipe-1.3.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named bspipe to run in Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

bspipe to run in Linux online


DESCRIPTION:

BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions:
(1) sequencing quality assessment,
(2) sequence cleaning,
(3) sequence read mapping,
(4) methylation quantification,
(4) sample comparisons based on methylation profile,
(5) identification of DMRs (differentially methylated regions),
(6) annotation of DMRs,
(7) functional analysis of differentially methylated genes,
(8) generation of input files for visualization, and
(9) support for advanced sequencing technologies such as TAB-seq, OxBS-seq, MAP-it, and NOMe-seq.

Audience

Science/Research


User interface

Command-line


Programming Language

Unix Shell, Perl, S/R



This is an application that can also be fetched from https://sourceforge.net/projects/bspipe/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.

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