This is the Linux app named cmotif whose latest release can be downloaded as C-Motif.zip. It can be run online in the free hosting provider OnWorks for workstations.
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cmotif
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DESCRIPTION
Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif for a non-redundant identification of significant phosphorylation motifs. In tests with real data including both non-kinase-specific and kinase-specific phosphorylation data, the C-Motif algorithm successfully reports a relatively complete set of of conditional phosphorylation motifs efficiently.
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/cmotif/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
