This is the Linux app named CUSHAW2: Parallel Gapped Read Alignment whose latest release can be downloaded as cushaw2-v2.1.11.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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CUSHAW2: Parallel Gapped Read Alignment
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DESCRIPTION
CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads.
Audience
Science/Research
User interface
Command-line
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/cushaw2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
