This is the Linux app named Genobuntu whose latest release can be downloaded as Genobuntu_Package.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Genobuntu
DESCRIPTION
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.
Commonly used biological software and example script files for different assembly pipelines have also been provided, where the example script files can be updated to suit one’s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build software workstations and it can also act as a good teaching source for a class room setting.
Therefore, Genobuntu offers a well-tailored environment for both novices and experts working in the field of genome assembly.
Features
- Velvet
- MiB
- SSAKE
- EULER
- VCAKE
- ABySS
- ALLPATHS
- Celera
- SHARCGS
- Allpaths
- IDBA
- TAIPAN
- Edena
- SOAPdenovo
- Maq
- IDBA-UD
- No. of Reads present in the Ref. Seq.
- ART NGS Reads Simulator
- HiTEC, FASTQC
- Minimum Description Length
- SOAPaligner
- Sequencing Read Archive Toolkit
Audience
Healthcare Industry, Science/Research, Education, Advanced End Users, End Users/Desktop, Engineering
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/genobuntu/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
