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HMCan download for Linux

Free download HMCan Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named HMCan whose latest release can be downloaded as HMCan.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named HMCan with OnWorks for free.

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- 1. Downloaded this application in your PC.

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- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

HMCan


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DESCRIPTION

HMCan is Hidden Markov Model based tool that is developed to detect histone modification in cancer ChIP-seq data. It applies three correction steps to the data: copy number correction, GC bias correction and noise level correction.
In order to run HMCan, one needs ChIP-seq target alignment file, and control alignment file. Some configuration are needed also, for more information please check README file.

Author: Haitham Ashoor
Contact: Valentina Boeva Institute Curie
Haitham Ashoor King Abdullah University of Science and Technology.



Programming Language

C++


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/hmcan/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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