This is the Linux app named HMCan whose latest release can be downloaded as HMCan.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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HMCan
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DESCRIPTION
HMCan is Hidden Markov Model based tool that is developed to detect histone modification in cancer ChIP-seq data. It applies three correction steps to the data: copy number correction, GC bias correction and noise level correction.
In order to run HMCan, one needs ChIP-seq target alignment file, and control alignment file. Some configuration are needed also, for more information please check README file.
Author: Haitham Ashoor
Contact: Valentina Boeva Institute Curie
Haitham Ashoor King Abdullah University of Science and Technology.
Programming Language
C++
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/hmcan/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
