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ImagingAnalysis download for Linux

Free download ImagingAnalysis Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named ImagingAnalysis whose latest release can be downloaded as BmalLD-processed.zip. It can be run online in the free hosting provider OnWorks for workstations.

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ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0.

Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.


  • Extracts time series from individual grids (cells) and plots in various formats
  • Detects peak positions and plot them as raster plots and histograms
  • Displays spatial distribution of oscillatory parameters, e.g. period
  • Estimates period using three independent measures (FFT/peak-peak/unwrapping)
  • Extracts time-dependent phases by using dimensional embedding
  • Detrends and normalizes raw time series
  • Reconstruct time-lapse images using normalized oscillations
  • Find clusters using spectral clustering and partial correlations
  • Calculates time-dependent phase coherence by Kuramoto Synchronization Index
  • Performs phase unwrapping
  • Animates phase development in a clock-like format


Healthcare Industry, Science/Research, by End-User Class

User interface

Other toolkit

Programming Language



Bio-Informatics, Visualization, Medical Physics

This is an application that can also be fetched from https://sourceforge.net/projects/imaginganalysis/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.

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