This is the Linux app named ImagingAnalysis whose latest release can be downloaded as BmalLD-processed.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named ImagingAnalysis with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
SCREENSHOTS
Ad
ImagingAnalysis
DESCRIPTION
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0.
Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.
Features
- Extracts time series from individual grids (cells) and plots in various formats
- Detects peak positions and plot them as raster plots and histograms
- Displays spatial distribution of oscillatory parameters, e.g. period
- Estimates period using three independent measures (FFT/peak-peak/unwrapping)
- Extracts time-dependent phases by using dimensional embedding
- Detrends and normalizes raw time series
- Reconstruct time-lapse images using normalized oscillations
- Find clusters using spectral clustering and partial correlations
- Calculates time-dependent phase coherence by Kuramoto Synchronization Index
- Performs phase unwrapping
- Animates phase development in a clock-like format
Audience
Healthcare Industry, Science/Research, by End-User Class
User interface
Other toolkit
Programming Language
Mathematica
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/imaginganalysis/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
