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Free download iMSAT to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named iMSAT to run in Linux online whose latest release can be downloaded as SSRs.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named iMSAT to run in Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SCREENSHOTS:

iMSAT to run in Linux online


DESCRIPTION:

iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money. Visit http://www.biomedcentral.com/1471-2164/15/858/abstract for the pdf article describing the utility of iMSAT and if you use the program please cite this article as: Andersen and Mills: iMSAT: a novel approach to the development of microsatellite loci using barcoded Illumina libraries. BMC Genomics 2014 15:858.

Features

  • Polymorphic Microsatellite Identification
  • Illumina Sequencing
  • Genomic Analysis


Audience

Science/Research


User interface

Command-line


Programming Language

Python



This is an application that can also be fetched from https://sourceforge.net/projects/imsat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.

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