OnWorks favicon

IPGWAS download for Linux

Free download IPGWAS Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named IPGWAS whose latest release can be downloaded as ipgwas3.0.5.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named IPGWAS with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.





Integrated Pipeline for Genome-Wide Association Studies


  • genome-wide association study (GWAS)
  • quality control (qc)
  • Manhattan plot and QQ plot
  • Cochran-Armitage trend test, Association test
  • combine GWAS dataset, Split GWAS Data by Chromosome
  • Convert EIGENSTRAT output chi-square to p value
  • Convert MACH imputation output to PED/MAP format and SNPTEST format
  • Convert PED/MAP files to the default input format of PHASE and BEAGLE
  • Convert PLINK and SNPTEST files to GWAMA format
  • P-Value Calculator (Chi-square test, Cochran-Armitage trend test, and Fisher's exact test)
  • Change affection status of GWAS data
  • filt Subjects of GWAS data by affection status (case/control) and/or gender (male/female)
  • GUI for PLINK, SNP ratio Test
  • filter singleton significant SNPs
  • eigPlot (plot the eigenstrat result)
  • Convert PED/MAP files to the default input format of MACH and IMPUTE2
  • Convert IMPUTE2 imputation output to TPED/TFAM (PLINK) format

This is an application that can also be fetched from https://sourceforge.net/projects/ipgwas/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Firebird RDBMS offers ANSI SQL features
    & runs on Linux, Windows &
    several Unix platforms. Features
    excellent concurrency & performance
    & power...
    Download Firebird
  • 2
    KompoZer is a wysiwyg HTML editor using
    the Mozilla Composer codebase. As
    Nvu's development has been stopped
    in 2005, KompoZer fixes many bugs and
    adds a f...
    Download KompoZer
  • 3
    Free Manga Downloader
    Free Manga Downloader
    The Free Manga Downloader (FMD) is an
    open source application written in
    Object-Pascal for managing and
    downloading manga from various websites.
    This is a mirr...
    Download Free Manga Downloader
  • 4
    UNetbootin allows you to create bootable
    Live USB drives for Ubuntu, Fedora, and
    other Linux distributions without
    burning a CD. It runs on Windows, Linux,
    and ...
    Download UNetbootin
  • 5
    Dolibarr ERP - CRM
    Dolibarr ERP - CRM
    Dolibarr ERP - CRM is an easy to use
    ERP and CRM open source software package
    (run with a web php server or as
    standalone software) for businesses,
    Download Dolibarr ERP - CRM
  • 6
    SQuirreL SQL Client
    SQuirreL SQL Client
    SQuirreL SQL Client is a graphical SQL
    client written in Java that will allow
    you to view the structure of a JDBC
    compliant database, browse the data in
    Download SQuirreL SQL Client
  • More »

Linux commands