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Just_Preprocess_My_Reads download for Linux

Free download Just_Preprocess_My_Reads Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named Just_Preprocess_My_Reads whose latest release can be downloaded as justpreprocessmyreads_Aug2015c.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named Just_Preprocess_My_Reads with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

Just_Preprocess_My_Reads


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DESCRIPTION

Identifies rRNA, contaminants, trims in a standard fashion etc. Maintains read pairs. Built for fire-and-forget high throughput projects (terabytes of data).

Uses pbzip2, bowtie2, fastx_toolkit, samtools, fastqc, Trimmomatic (optional)



Features

  • illumina pre-processing
  • contamination checking


Audience

Science/Research




Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/justpreprocessmyreads/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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