This is the Linux app named metasort to run in Linux online whose latest release can be downloaded as metaSort.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named metasort to run in Linux online with OnWorks for free.
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metasort to run in Linux online
DESCRIPTION
Most current approaches analyze metagenomic data with the participation of reference genomes. However, novel microbial communities extend far beyond the coverage of reference databases and de novo metagenome assembly from complex microbial communities still remains a great challenge. Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on flow cytometry and single-cell sequencing methodologies, and employs new computational algorithms to efficiently recover high-quality genomes from the sorted mini-metagenome by the complementary of the original metagenome. Through extensive evaluations on simulated dataset, salivary and gut microbiomes, we demonstrated that metaSort has an excellent and unbiased performance on genome recovery and assembly.This is an application that can also be fetched from https://sourceforge.net/projects/metasort/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
