This is the Linux app named MuffinEC whose latest release can be downloaded as muffinec-2.0b.zip. It can be run online in the free hosting provider OnWorks for workstations.
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MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation.
We are developing the 2nd version of MuffinEC. The beta version is already available online. The changes are listed in the VERSION_HISTORY file. Please report any problem you may encounter at the email address specified in the README file. We really appreciate your help.
- Handles insertions, deletions, mismatches, unknown bases
- Supports Illumina, 454, Ion Torrent and PacBio (experimental)
- Generic param for other technologies
- Low memory consumption
Information Technology, Healthcare Industry, Science/Research, Advanced End Users, Developers, End Users/Desktop
This is an application that can also be fetched from https://sourceforge.net/projects/muffinec/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.