This is the Linux app named MutaNET whose latest release can be downloaded as MutaNET-v1.1.2.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS
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MutaNET
DESCRIPTION
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance.
Features
- NGS variant calling pipeline
- automated mutation analysis
- gene regulatory network analysis
- define genes of interest
- coding region mutations
- transcription factor binding side mutations
- protein domain mutations
- file format converters
Audience
Healthcare Industry, Science/Research
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mutanet/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
