This is the Linux app named NeedlemanWunsch whose latest release can be downloaded as needleman_wunsch-0.3.5.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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NeedlemanWunsch
DESCRIPTION
MOVED TO GITHUB: https://github.com/noporpoise/seq-align
Global optimal sequence alignment using the Needleman-Wunsch algorithm.
Aligns DNA, RNA, protein sequence and more!
See our sister project local alignment using Smith-Waterman:
http://sourceforge.net/projects/smithwaterman/
Features
- Affine gap penalties
- Can set no gap penalty for gaps at the beginning and end of alignments
- Coloured ouput
- Reads FASTA, FASTQ and plain sequence files (inc. gzip'ed files)
- Preset DNA/Protein substitution matrices (PAM/BLOSUM etc)
- Can load substitution penalty matrices
- Portable C code that can be used in other bioinformatics projects
Audience
Science/Research, Education
User interface
Console/Terminal, Command-line
Programming Language
C++, C
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/needlemanwunsch/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
