This is the Linux app named olego whose latest release can be downloaded as olego.src.v1.1.6.tgz. It can be run online in the free hosting provider OnWorks for workstations.
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olego
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DESCRIPTION
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data.
Audience
Science/Research
User interface
Command-line
Programming Language
C++, C
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/ngs-olego/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
