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PARSEC - PAtteRn SEarch / Context to run in Linux online d

Free download PARSEC - PAtteRn SEarch / Context to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named PARSEC - PAtteRn SEarch / Context to run in Linux online whose latest release can be downloaded as PARSEC_Deployment_Package_v2.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named PARSEC - PAtteRn SEarch / Context to run in Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

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PARSEC - PAtteRn SEarch / Context to run in Linux online


DESCRIPTION

The characterization of genomic sites is a major challenge in the understanding and exploitation of next generation sequencing data. Most genomic sites are represented by short, degenerated motifs with a scattered distribution and sometimes with biological function (ex: regulation of gene expression, splicing patterns or epigenetics signals). These motifs are associated with a huge amount of noise and thus, the development of a computational platform for accurate detection of genomic sites requires the integration of various large-scale biological data in order to filter out false positives.

PARSEC represents an intuitive, modular (easily extensible) and all-in-one solution for the efficient integration of lots of diverse genomic information in order to perform nonlinear localization and characterization of biological sites in a user-friendly environment.

See the wiki for hardware requirements and supported browsers.

Audience

Science/Research


User interface

Web-based


Programming Language

C++, Java


Database Environment

JDBC, MySQL, PostgreSQL (pgsql)


This is an application that can also be fetched from https://sourceforge.net/projects/genomicparsec/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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