This is the Linux app named PoPoolation TE2 whose latest release can be downloaded as popte2-v1.10.04.jar. It can be run online in the free hosting provider OnWorks for workstations.
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DESCRIPTIONPoPoolationTE2: enables comparative population genomics of transposable elements (TE). As a major innovation PoPoolation TE2 introduces the physical pileup file which allows to homogenize the power to identify TEs and thus enables an unbiased comparison of TE abundance between samples, where samples could be pooled populations, tissues or sequenced individuals.
This is an application that can also be fetched from https://sourceforge.net/projects/popoolation-te2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.