This is the Linux app named protein-ms whose latest release can be downloaded as mres2x_1269.zip. It can be run online in the free hosting provider OnWorks for workstations.
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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
Java Swing, Win32 (MS Windows), Non-interactive (Daemon), Console/Terminal, Command-line
MATLAB, Visual Basic, C, Java
This is an application that can also be fetched from https://sourceforge.net/projects/protms/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.