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Free download RaTrav to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named RaTrav to run in Linux online whose latest release can be downloaded as RaTrav.13.09.16.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named RaTrav to run in Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

RaTrav to run in Linux online


DESCRIPTION:

RaTrav tool was designed to support computational biology studies where mean first-passage times (MFPTs) between initial and single or multiple final states in network-like systems are used. The tool approves arbitrary networks (graphs) where a dynamics of the Markovian type takes place. Two methods are made available for which their efficiency is strongly dependent on the topology of the defined network: the combinatorial Hill technique and the Monte Carlo simulation method.

References:
M. Torchala, P. Chelminiak, M. Kurzynski and P. A. Bates, 'RaTrav: a tool for calculating mean first-passage times on biochemical networks', BMC Syst. Biol. 7, 130 (2013).

M. Torchala, P. Chelminiak and P. A. Bates, 'Mean first-passage time calculations: comparison of the deterministic Hill's algorithm with Monte Carlo simulations', Eur. Phys. J. B 85, 116 (2012).

Audience

Science/Research


User interface

Console/Terminal


Programming Language

C++



This is an application that can also be fetched from https://sourceforge.net/projects/ratrav/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.

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