This is the Linux app named skewer to run in Linux online whose latest release can be downloaded as benchmark1-arabidopsis.thaliana-scripts.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named skewer to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
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- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
skewer to run in Linux online
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DESCRIPTION
This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.Features
- Detection and removal of adapter sequences
- Insertion and deletion allowed in pattern matching
- Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
- Demultiplexing of barcoded sequencing runs
- Multi-threading support
- Trimming based on phred quality scores
- IUPAC characters for barcodes and adapters
- Compressed input and output support
Audience
Science/Research
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/skewer/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
