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SOAPdenovo2 download for Linux

Free download SOAPdenovo2 Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named SOAPdenovo2 whose latest release can be downloaded as SOAPdenovo2-src-r240.tgz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named SOAPdenovo2 with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SOAPdenovo2


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DESCRIPTION

What's next of SOAPdenovo2:
MEGAHIT is the formal successor of SOAPdenovo2
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
http://www.ncbi.nlm.nih.gov/pubmed/25609793
https://github.com/voutcn/megahit

Latest Code on GitHub:
https://github.com/aquaskyline/SOAPdenovo2

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.



Audience

Science/Research, Developers


User interface

Command-line


Programming Language

C++, C


Database Environment

Flat-file


This is an application that can also be fetched from https://sourceforge.net/projects/soapdenovo2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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