This is the Linux app named SW# whose latest release can be downloaded as swsharp-src.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named SW# with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
SW#
Ad
DESCRIPTION
SW# (swsharp) is a library for sequence alignment based on CUDA enabled GPUs. It utilizes Hirschbergs and Ukkonens algorithm for memory efficiency and additional speed up. The library is scalable for use with multiple GPUs. Some parts of the library utilize MPI for CUDA enabled clusters.This work has been supported in part by Croatian Science Foundation under the project UIP-11-2013-7353.
Database search now available!
Publications:
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0145857
http://bioinformatics.oxfordjournals.org/content/29/19/2494
http://nar.oxfordjournals.org/content/early/2013/11/23/nar.gkt1164.abstract#!
Related work:
http://exolocator.bii.a-star.edu.sg/
NEW:
SW# web edition:
http://swsharp.zesoi.fer.hr/
This is an application that can also be fetched from https://sourceforge.net/projects/swsharp/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
