This is the Linux app named Tuque whose latest release can be downloaded as tuque.v1.0.4.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
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Tuque includes 4 programs:
tuqueIndex to prepare Bowtie indexes that include spliced sequences
tuqueMap to map reads using the prepared indices
tuqueSplice to find splice junctions from the reads
tuqueCount to count the reads mapping within annotated sequence intervals
Science/Research, Advanced End Users
This is an application that can also be fetched from https://sourceforge.net/projects/tuque/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.