EnglishFrenchSpanish

Ad


OnWorks favicon

TVscript download for Linux

Free download TVscript Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named TVscript whose latest release can be downloaded as tvscript.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named TVscript with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SCREENSHOTS

Ad


TVscript


DESCRIPTION

TVscript is a tool designed to allow the user to explore the removal of transcripts associated with intra-condition read count variation that is greater than a user specified threshold. A set of updated count files is produced from the original input data in which such transcripts are absent. These updated count files can be subsequently used within downstream analysis, for example, in the identification of differentially expressed transcripts. In the latter, the extent intra-condition variation affects the final lists of identified genes ambiguously, and inconsistently, across different software designed for this task. Being able to explore the effects of removing such variation at varying thresholds increases the intuitive insight relative to both differential expression analysis and to other areas of research that use such data. Full details, and two case studies involving transcriptomic data associated with canid domestication, are available in our paper: link available shortly.



Features

  • Exploration of the effects of intra-condition variation across RNA-seq datasets
  • Complete test data example within download folder
  • Executable jar file, runs on any platform
  • Easy to install, just unzip folder


Audience

Science/Research


User interface

Console/Terminal


Programming Language

Java



This is an application that can also be fetched from https://sourceforge.net/projects/tvscript/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    SAGA GIS
    SAGA GIS
    SAGA - System for Automated
    Geoscientific Analyses - is a Geographic
    Information System (GIS) software with
    immense capabilities for geodata
    processing and ana...
    Download SAGA GIS
  • 2
    Toolbox for Java/JTOpen
    Toolbox for Java/JTOpen
    The IBM Toolbox for Java / JTOpen is a
    library of Java classes supporting the
    client/server and internet programming
    models to a system running OS/400,
    i5/OS, o...
    Download Toolbox for Java/JTOpen
  • 3
    D3.js
    D3.js
    D3.js (or D3 for Data-Driven Documents)
    is a JavaScript library that allows you
    to produce dynamic, interactive data
    visualizations in web browsers. With D3
    you...
    Download D3.js
  • 4
    Shadowsocks
    Shadowsocks
    A fast tunnel proxy that helps you
    bypass firewalls This is an application
    that can also be fetched from
    https://sourceforge.net/projects/shadowsocksgui/.
    It ha...
    Download Shadowsocks
  • 5
    GLPI Themes
    GLPI Themes
    Download release at
    https://github.com/stdonato/glpi-modifications/
    Color themes for GLPI 0.84 and 0.85 New
    Modifications for GLPI This is an
    application that c...
    Download GLPI Themes
  • 6
    SMPlayer
    SMPlayer
    SMPlayer is a free media player for
    Windows and Linux with built-in codecs
    that can also play YouTube videos. One
    of the most interesting features of
    SMPlayer:...
    Download SMPlayer
  • More »

Linux commands

Ad